3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01663

Details:

PFam ID : PF01663

PFam Domain Description : Type I phosphodiesterase / nucleotide pyrophosphatase

Number of Sequence in 50% Dataset : 647

Number of Sequence in Full Dataset : 2016

Average sequence length: 288.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01663	D0LQ60_HALO1_65_552	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01663	C3Y482_BRAFL_169_222	99.5

Sequence based PCA Plot of the family - PF01663 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=554 Length=8
Motif2 Start=55 Length=11
Motif3 Start=1 Length=8
Motif4 Start=432 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay