3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01660

Details:

PFam ID : PF01660

PFam Domain Description : Viral methyltransferase

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 327

Average sequence length: 302.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01660	B8PRG6_9VIRU_50_482	66.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01660	A8RS49_9CLOS_763_1125	98.4

Sequence based PCA Plot of the family - PF01660 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay