3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01659 Details: PFam ID : PF01659 PFam Domain Description : Luteovirus putative VPg genome linked protein Number of Sequence in 50% Dataset : 6 Number of Sequence in Full Dataset : 44 Average sequence length: 99.7 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01659D5IC72_9LUTE_1_7820 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01659B3FHC2_9LUTE_47_151100 Sequence based PCA Plot of the family - PF01659 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=28 Length=8Motif2 Start=19 Length=8Motif3 Start=10 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01659
PFam Domain Description : Luteovirus putative VPg genome linked protein
Number of Sequence in 50% Dataset : 6
Number of Sequence in Full Dataset : 44
Average sequence length: 99.7
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER