3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01656

Details:

PFam ID : PF01656

PFam Domain Description : CobQ/CobB/MinD/ParA nucleotide binding domain

Number of Sequence in 50% Dataset : 0

Number of Sequence in Full Dataset : 8110

Average sequence length: 206.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01656	B5DSF4_DROPS_15_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01656	C0B9Z7_9FIRM_19_90	73

Sequence based PCA Plot of the family - PF01656 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay