3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01654

Details:

PFam ID : PF01654

PFam Domain Description : Bacterial Cytochrome Ubiquinol Oxidase

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 1004

Average sequence length: 425.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01654	Q5GZF7_XANOR_1_74	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01654	Q47RW3_THEFY_8_250	100

Sequence based PCA Plot of the family - PF01654 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=50 Length=8
Motif2 Start=11 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay