3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01653

Details:

PFam ID : PF01653

PFam Domain Description : NAD-dependent DNA ligase adenylation domain

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 1463

Average sequence length: 293.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01653	F0ZLE7_DICPU_46_439	72.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01653	F0ZLE7_DICPU_46_439	100

Sequence based PCA Plot of the family - PF01653 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=29 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay