3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01652

Details:

PFam ID : PF01652

PFam Domain Description : Eukaryotic initiation factor 4E

Number of Sequence in 50% Dataset : 163

Number of Sequence in Full Dataset : 537

Average sequence length: 159.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01652	A2EIS9_TRIVA_14_196	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01652	E2LAE5_MONPE_64_126	100

Sequence based PCA Plot of the family - PF01652 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=11
Motif2 Start=107 Length=11
Motif3 Start=122 Length=8
Motif4 Start=32 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay