3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01648

Details:

PFam ID : PF01648

PFam Domain Description : 4'-phosphopantetheinyl transferase superfamily

Number of Sequence in 50% Dataset : 805

Number of Sequence in Full Dataset : 2556

Average sequence length: 111.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01648	C2MBP4_9PORP_88_240	99.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01648	C7N1W8_SLAHD_107_223	100

Sequence based PCA Plot of the family - PF01648 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=11
Motif2 Start=2 Length=21
Motif3 Start=208 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay