3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01646

Details:

PFam ID : PF01646

PFam Domain Description : Herpes virus protein UL24

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 50

Average sequence length: 171.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01646	Q9DUI8_BHV4_1_94	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01646	Q91TM0_TUHV1_14_209	100

Sequence based PCA Plot of the family - PF01646 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay