3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01645

Details:

PFam ID : PF01645

PFam Domain Description : Conserved region in glutamate synthase

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 1350

Average sequence length: 328.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01645	Q22EZ8_TETTH_246_322	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01645	F2KDF3_PSEBR_793_914	100

Sequence based PCA Plot of the family - PF01645 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=1 Length=8
Motif3 Start=51 Length=11
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay