3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01644

Details:

PFam ID : PF01644

PFam Domain Description : Chitin synthase

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 230

Average sequence length: 144.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01644	Q22EZ8_TETTH_246_322	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01644	Q5BF81_EMENI_119_281	100

Sequence based PCA Plot of the family - PF01644 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=100 Length=8
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay