3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01643

Details:

PFam ID : PF01643

PFam Domain Description : Acyl-ACP thioesterase

Number of Sequence in 50% Dataset : 241

Number of Sequence in Full Dataset : 525

Average sequence length: 214.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01643	C2H7V9_ENTFC_4_67	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01643	B6WB01_9FIRM_1_85	99.8

Sequence based PCA Plot of the family - PF01643 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay