3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01642

Details:

PFam ID : PF01642

PFam Domain Description : Methylmalonyl-CoA mutase

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 1066

Average sequence length: 429.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01642	B4DCE9_9BACT_50_579	74.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01642	F2TX40_9EUKA_390_482	100

Sequence based PCA Plot of the family - PF01642 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=11
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay