3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01638

Details:

PFam ID : PF01638

PFam Domain Description : HxlR-like helix-turn-helix

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 2896

Average sequence length: 89.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01638	Q73PI5_TREDE_3_56	83.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01638	C2FTY5_9SPHI_27_86	100

Sequence based PCA Plot of the family - PF01638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=41 Length=17
Motif3 Start=1 Length=11
Motif4 Start=61 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay