3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01637

Details:

PFam ID : PF01637

PFam Domain Description : Archaeal ATPase

Number of Sequence in 50% Dataset : 467

Number of Sequence in Full Dataset : 1050

Average sequence length: 200.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01637	B6W601_9BACE_47_143	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01637	E1QST1_VULDI_23_289	99.3

Sequence based PCA Plot of the family - PF01637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay