3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01634

Details:

PFam ID : PF01634

PFam Domain Description : ATP phosphoribosyltransferase

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 1060

Average sequence length: 160.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01634	Q6SHJ3_9BACT_54_159	63.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01634	D3E2Z0_METRM_57_249	100

Sequence based PCA Plot of the family - PF01634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=146 Length=11
Motif3 Start=2 Length=8
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay