3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01633

Details:

PFam ID : PF01633

PFam Domain Description : Choline/ethanolamine kinase

Number of Sequence in 50% Dataset : 275

Number of Sequence in Full Dataset : 697

Average sequence length: 196.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01633	D8M7Y9_BLAHO_1_80	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01633	A8PGE9_BRUMA_101_178	100

Sequence based PCA Plot of the family - PF01633 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=123 Length=8
Motif3 Start=109 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay