3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01630

Details:

PFam ID : PF01630

PFam Domain Description : Hyaluronidase

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 150

Average sequence length: 243.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01630	Q4RX86_TETNG_3_63	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01630	C9J2X5_HUMAN_38_80	100

Sequence based PCA Plot of the family - PF01630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=97 Length=8
Motif2 Start=74 Length=8
Motif3 Start=62 Length=8
Motif4 Start=34 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay