3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01628

Details:

PFam ID : PF01628

PFam Domain Description : HrcA protein C terminal domain

Number of Sequence in 50% Dataset : 213

Number of Sequence in Full Dataset : 805

Average sequence length: 217.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01628	Q93G06_LACAC_1_143	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01628	D3AU45_9CLOT_105_232	99.8

Sequence based PCA Plot of the family - PF01628 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=33 Length=8
Motif3 Start=162 Length=8
Motif4 Start=180 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay