3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01624

Details:

PFam ID : PF01624

PFam Domain Description : MutS domain I

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 1248

Average sequence length: 110.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01624	E5X092_9BACE_668_731	63.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01624	D1JMB2_9BACE_4_95	96.3

Sequence based PCA Plot of the family - PF01624 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=76 Length=8
Motif2 Start=115 Length=11
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay