3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01623

Details:

PFam ID : PF01623

PFam Domain Description : Carlavirus putative nucleic acid binding protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 61

Average sequence length: 87.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01623	Q9DX55_9VIRU_6_90	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01623	Q4A3P9_9VIRU_1_88	100

Sequence based PCA Plot of the family - PF01623 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=55 Length=11
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay