3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01621

Details:

PFam ID : PF01621

PFam Domain Description : Cell fusion glycoprotein K

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 23

Average sequence length: 281.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01621	A9ZML9_HHV2_1_133	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01621	GK_PSHV1_1_358	100

Sequence based PCA Plot of the family - PF01621 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=181 Length=8
Motif3 Start=223 Length=8
Motif4 Start=166 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay