3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01618

Details:

PFam ID : PF01618

PFam Domain Description : MotA/TolQ/ExbB proton channel family

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 3067

Average sequence length: 133.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01618	E8IV72_ECOLX_3_74	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01618	D2QV02_SPILD_21_112	100

Sequence based PCA Plot of the family - PF01618 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=8
Motif2 Start=5 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay