3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01614

Details:

PFam ID : PF01614

PFam Domain Description : Bacterial transcriptional regulator

Number of Sequence in 50% Dataset : 1034

Number of Sequence in Full Dataset : 3482

Average sequence length: 122.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01614	B9P7L6_POPTR_222_301	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01614	Q0RXC0_RHOSR_128_162	100

Sequence based PCA Plot of the family - PF01614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=52 Length=8
Motif3 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay