3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01613

Details:

PFam ID : PF01613

PFam Domain Description : Flavivirus capsid protein C

Number of Sequence in 50% Dataset : 416

Number of Sequence in Full Dataset : 2950

Average sequence length: 152.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01613	D5GKR9_TUBMM_2_111	74.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01613	Q4PHR8_USTMA_95_165	100

Sequence based PCA Plot of the family - PF01613 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=69 Length=11
Motif3 Start=1 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay