3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01612

Details:

PFam ID : PF01612

PFam Domain Description : 3'-5' exonuclease

Number of Sequence in 50% Dataset : 523

Number of Sequence in Full Dataset : 2411

Average sequence length: 170.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01612	E3MHV2_CAERE_22_153	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01612	A2EJK5_TRIVA_157_278	100

Sequence based PCA Plot of the family - PF01612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=8
Motif2 Start=132 Length=8
Motif3 Start=23 Length=8
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay