3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01610

Details:

PFam ID : PF01610

PFam Domain Description : Transposase

Number of Sequence in 50% Dataset : 421

Number of Sequence in Full Dataset : 1329

Average sequence length: 152.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01610	D4U0Y4_9ACTO_1_56	60.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01610	Q8FTX3_COREF_21_145	99.6

Sequence based PCA Plot of the family - PF01610 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay