3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01609

Details:

PFam ID : PF01609

PFam Domain Description : Transposase DDE domain

Number of Sequence in 50% Dataset : 1045

Number of Sequence in Full Dataset : 3371

Average sequence length: 181.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01609	B3JMA2_9BACE_123_400	78.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01609	A7V4I6_BACUN_128_294	92.5

Sequence based PCA Plot of the family - PF01609 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=9 Length=8
Motif3 Start=242 Length=8
Motif4 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay