3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01608

Details:

PFam ID : PF01608

PFam Domain Description : I/LWEQ domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 128

Average sequence length: 174.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01608	F2U5D5_9EUKA_679_874	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01608	F2U5D5_9EUKA_679_874	100

Sequence based PCA Plot of the family - PF01608 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=45 Length=8
Motif3 Start=11 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay