3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01606

Details:

PFam ID : PF01606

PFam Domain Description : Arterivirus envelope protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 29

Average sequence length: 201.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01606	Q4U5T4_PRRSV_1_185	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01606	Q83020_LDV_1_191	100

Sequence based PCA Plot of the family - PF01606 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay