3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01602

Details:

PFam ID : PF01602

PFam Domain Description : Adaptin N terminal region

Number of Sequence in 50% Dataset : 428

Number of Sequence in Full Dataset : 1317

Average sequence length: 436.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01602	Q5CQ77_CRYPV_25_663	83.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01602	C3YUH2_BRAFL_53_203	97.8

Sequence based PCA Plot of the family - PF01602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=360 Length=8
Motif3 Start=64 Length=8
Motif4 Start=542 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay