3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01601

Details:

PFam ID : PF01601

PFam Domain Description : Coronavirus S2 glycoprotein

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 104

Average sequence length: 376.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01601	C8YZ70_CVTKE_179_298	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01601	B2BW33_9GAMC_813_1471	100

Sequence based PCA Plot of the family - PF01601 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=104 Length=8
Motif4 Start=33 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay