3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01600

Details:

PFam ID : PF01600

PFam Domain Description : Coronavirus S1 glycoprotein

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 361

Average sequence length: 294.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01600	B3FHU5_CVTKE_137_518	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01600	C8YZ70_CVTKE_37_155	100

Sequence based PCA Plot of the family - PF01600 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=89 Length=8
Motif2 Start=48 Length=11
Motif3 Start=240 Length=8
Motif4 Start=21 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay