3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01597

Details:

PFam ID : PF01597

PFam Domain Description : Glycine cleavage H-protein

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 1334

Average sequence length: 118.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01597	Q03PR8_LACBA_4_104	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01597	F0ZYV5_DICPU_27_166	100

Sequence based PCA Plot of the family - PF01597 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=70 Length=8
Motif2 Start=34 Length=14
Motif3 Start=92 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay