3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01596

Details:

PFam ID : PF01596

PFam Domain Description : O-methyltransferase

Number of Sequence in 50% Dataset : 198

Number of Sequence in Full Dataset : 1291

Average sequence length: 188.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01596	Q31A74_PROM9_6_191	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01596	E2Q5Z3_STRCL_111_333	100

Sequence based PCA Plot of the family - PF01596 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=73 Length=8
Motif3 Start=57 Length=8
Motif4 Start=38 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay