3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01595

Details:

PFam ID : PF01595

PFam Domain Description : Domain of unknown function DUF21

Number of Sequence in 50% Dataset : 344

Number of Sequence in Full Dataset : 2618

Average sequence length: 185.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01595	F1L7L3_ASCSU_1_93	82.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01595	D4EE64_AGGAC_8_76	100

Sequence based PCA Plot of the family - PF01595 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay