3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01593

Details:

PFam ID : PF01593

PFam Domain Description : Flavin containing amine oxidoreductase

Number of Sequence in 50% Dataset : 1396

Number of Sequence in Full Dataset : 4003

Average sequence length: 345.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01593	LSD2_SCHPO_516_1035	77.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01593	A5KE11_PLAVS_440_687	97.1

Sequence based PCA Plot of the family - PF01593 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=128 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay