3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01592

Details:

PFam ID : PF01592

PFam Domain Description : NifU-like N terminal domain

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 1223

Average sequence length: 124.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01592	B1VA18_PHYAS_1_96	89.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01592	D7MD73_ARALL_79_149	99.9

Sequence based PCA Plot of the family - PF01592 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay