3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01590

Details:

PFam ID : PF01590

PFam Domain Description : GAF domain

Number of Sequence in 50% Dataset : 1650

Number of Sequence in Full Dataset : 5624

Average sequence length: 144.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01590	C9YT03_STRSW_271_354	65.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01590	B4WRG0_9SYNE_309_386	93.4

Sequence based PCA Plot of the family - PF01590 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=239 Length=8
Motif3 Start=278 Length=8
Motif4 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay