3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01589

Details:

PFam ID : PF01589

PFam Domain Description : Alphavirus E1 glycoprotein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 47

Average sequence length: 288.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01589	E0ZMG1_SPDV_363_402	18.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01589	Q88801_EEEV_1_86	100

Sequence based PCA Plot of the family - PF01589 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=9 Length=18
Motif3 Start=159 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay