3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01585

Details:

PFam ID : PF01585

PFam Domain Description : G-patch domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 1017

Average sequence length: 44.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01585	B3H4X1_ARATH_360_377	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01585	D2V0G0_NAEGR_217_253	97.0

Sequence based PCA Plot of the family - PF01585 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=39 Length=8
Motif4 Start=4 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay