3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01584

Details:

PFam ID : PF01584

PFam Domain Description : CheW-like domain

Number of Sequence in 50% Dataset : 896

Number of Sequence in Full Dataset : 3569

Average sequence length: 134.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01584	F0YWK4_9CLOT_29_127	59.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01584	E8RHS9_9DELT_424_607	100

Sequence based PCA Plot of the family - PF01584 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=76 Length=8
Motif2 Start=21 Length=17
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay