3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01583

Details:

PFam ID : PF01583

PFam Domain Description : Adenylylsulphate kinase

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 900

Average sequence length: 152.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01583	Q4PJ34_9BACT_2_90	63.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01583	F0JG81_DESDE_7_177	100

Sequence based PCA Plot of the family - PF01583 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=5 Length=20
Motif3 Start=146 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay