3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01582

Details:

PFam ID : PF01582

PFam Domain Description : TIR domain

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 1154

Average sequence length: 123.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01582	B4Y0Z3_BRAFL_1_81	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01582	D7KWJ5_ARALL_39_127	99.5

Sequence based PCA Plot of the family - PF01582 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay