3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01581

Details:

PFam ID : PF01581

PFam Domain Description : FMRFamide related peptide family

Number of Sequence in 50% Dataset : 351

Number of Sequence in Full Dataset : 351

Average sequence length: 10.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01581	A8WNT7_CAEBR_136_179	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01581	B4QHT7_DROSI_226_234	52

Sequence based PCA Plot of the family - PF01581 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay