3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01580 Details: PFam ID : PF01580 PFam Domain Description : FtsK/SpoIIIE family Number of Sequence in 50% Dataset : 380 Number of Sequence in Full Dataset : 2277 Average sequence length: 190.1 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01580A8WNT7_CAEBR_136_179No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01580Q2LET8_9ACTO_5_12299.9 Sequence based PCA Plot of the family - PF01580 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=19 Length=8Motif2 Start=10 Length=8Motif3 Start=1 Length=8Motif4 Start=43 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01580
PFam Domain Description : FtsK/SpoIIIE family
Number of Sequence in 50% Dataset : 380
Number of Sequence in Full Dataset : 2277
Average sequence length: 190.1
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER