3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01579

Details:

PFam ID : PF01579

PFam Domain Description : Domain of unknown function (DUF19)

Number of Sequence in 50% Dataset : 139

Number of Sequence in Full Dataset : 238

Average sequence length: 151.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01579	A8WNT7_CAEBR_136_179	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01579	E3MYD0_CAERE_23_215	91.5

Sequence based PCA Plot of the family - PF01579 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay