3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01578

Details:

PFam ID : PF01578

PFam Domain Description : Cytochrome C assembly protein

Number of Sequence in 50% Dataset : 253

Number of Sequence in Full Dataset : 2323

Average sequence length: 195.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01578	Q4E8L3_9RICK_1_119	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01578	Q1ITP6_ACIBL_112_243	99.8

Sequence based PCA Plot of the family - PF01578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=49 Length=8
Motif3 Start=5 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay