3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01576

Details:

PFam ID : PF01576

PFam Domain Description : Myosin tail

Number of Sequence in 50% Dataset : 131

Number of Sequence in Full Dataset : 440

Average sequence length: 434.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01576	Q61930_MOUSE_1_102	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01576	Q4TTU6_CAERE_1_79	99.7

Sequence based PCA Plot of the family - PF01576 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=21 Length=8
Motif3 Start=1 Length=11
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay