3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01575

Details:

PFam ID : PF01575

PFam Domain Description : MaoC like domain

Number of Sequence in 50% Dataset : 222

Number of Sequence in Full Dataset : 2736

Average sequence length: 118.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01575	C5NCV2_BURMA_1_79	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01575	B8BSZ3_THAPS_242_380	100

Sequence based PCA Plot of the family - PF01575 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=51 Length=8
Motif3 Start=80 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay